Results for "annotated"
Top-level pages
...ly valuable through their annotation. Several layers of analysis with bioinformatics tools are necessary to arrive from a raw DNA sequence at an annotated protein sequences: establi...3953 days ago
Next generation sequencing in R or bioconductor environment
...a Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can quantify the number of reads aligning to annotated genomic regions. The package...3631 days ago
Apps for Busy Bioinformatics Researchers !!!
....apple.com/us/app/yeastgenome/id520868597?mt=8 SNPdbe: iPhone/iPad SNPdbe — SNP database of effects, with predictions of computationally annotated functional impacts of SNPs. D...3548 days ago
Comprehensive list of visualization tools for biological pathways
...on maps representing biological pathways and groupings of genes http://www.genmapp.org/ Ingenuity IPA Data integration platform and manually annotated pathways http://tinyurl.com/...2293 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...or; Input: 2 BAM files(tumor & normal), annotated as germline or somatic; also...information. These somatic mutations can be annotated with predicted transcript and...Genetic format, VCF Output: File containing annotated SNPs is copied from SNP list...2915 days ago
Genome Assembly Tools and Software - PART1 !!
...oys sets of Benchmarking Universal Single-Copy Orthologs from OrthoDB to provide quantitative measures of the completeness of genome assemblies, annotated gene sets, and transcriptomes...2692 days ago
Awesome perl frameworks, libraries and software - PART 1
...Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each variant is annotated to only one of all possible g...2495 days ago
Tools for bacterial whole genome annotation
...line for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installe...2338 days ago
