1950 days ago
1948 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a use...1826 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own configuratio...undo/redo functions is available. Users are able to directly set an annotation to a specific state, choosing...1810 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
...ze and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and provides extensive functional annotation for all SNPs in genomic areas...1810 days ago
GffCompare: Program for processing GTF/GFF files
The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).1771 days ago
The Extensive de novo TE Annotator (EDTA)
...generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckmarkings on the annotation performance using a manually...1742 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS...1737 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid...1723 days ago
Apollo: a sequence annotation editor
...ions by viewing and independently evaluating the data supporting each annotation. Apollo was developed to meet this need, enabling curators to inspect genome annotations closely and edit them1722 days ago