Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality con...2062 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via command line. CSBFinder implements a novel methodology for the discove...2018 days ago
BamView: a free interactive display of read alignments in BAM data files
To run the application on UNIX from the downloaded jar file run the UNIX: java -mx512m -jar BamView.jar and extra command line options are given when '-h' is used: java -jar...2003 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
...or aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads and application. lordFAST, a novel long-read...1985 days ago
Biotite: A general framework for computational biology
...e consists of four sub packages: sequence, structure, databases, and application. The sequence and&n...;downloads files from the other databases such as RCSB PDB, and application provides interface for e...1964 days ago
1936 days ago
Genome assembly forensics: finding the elusive mis-assembly
...detecting mis-assemblies, and describes their implementation in our automated validation pipeline, called amosvalidate. We demonstrate the application of our pipeline in both bacte...1924 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you can i...1646 days ago
1642 days ago
GfaViz: flexible and interactive visualization of GFA sequence graphs
...epresenting sequence graphs. Although it was originally conceived as a format for sequence assembly (hence the name), and this remains its core application, it is more general, and able...1563 days ago