Results for "aware"
Bookmarks
Statistical for biological research
...only after an experiment is completed, when it may be too late. This collection highlights important statistical issues that biologists should be aware of and provides practical adv...2754 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2638 days ago
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Awesome perl frameworks, libraries and software - PART 2
...rl interface to HP Integrated Lights-Out NET-A-PORTER/NAP-policy - Policy / pragma for Perl code written at NAP neevek/minerl - A blog-aware static site generator written...2508 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...250, 2008 PubMedCentral [requires a reference sequence] Quake: quality-aware detection and correction of s...l Text [includes error correction of SOLiD reads in colorspace] Repeat-aware modeling and correction of sh...3793 days ago
Genome Assembly Tools and Software - PART1 !!
...nd whole contig overviews and data summaries. Tablet is both multi-core aware and memory efficient, allowin...in terms of expected gene content. FinisherSC 2.0 – A Repeat-aware tool for upgrading de-novo As...2700 days ago
News
- ..., QC metrics, consensus alignment, UMI-based family size filters for read list, genome browser enabled with UMI-specific features and filters, UMI-aware variant calling parameters, a...
2385 days ago
Opportunity posts
Sr.Bioinformatics Analyst (NGS) at Ocimum Biosolution
.... 8. Must have experience working on opensource software/Framework and commercial software for NGS data analysis and reporting. 9. Should be aware of handling big data and guid...3473 days ago
Sr.Bioinformatics Analyst (NGS) @ OcimumBio
...rred. 8. Must have experience working on opensource software/Framework and commercial software for NGS data analysis and reporting. 9. Should be aware of handling big data and guid...2939 days ago
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repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correct if: Their relative orientation is correct Their relative order is correct The gap estimate...Tags: Repeat, aware, scaffolding, evaluation, framework, Igor, Mandric, repeat-aware
2251 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which are usua...Tags: LoFreq, sequence, quality, aware, ultra-sensitive, variant, caller, NGS, data
1552 days ago
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