Results for "bed"
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NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...callers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV is in ANNOVAR-compatible bed format. Users can easily perf...2108 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2013 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...d interactive linked-visualizations and is able to make many-views from the same primary sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text files. ...1957 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...out 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a distributio...1641 days ago
- ...amples. cisMuton calls mutations from target capture regions, which are defined by the overlapping regions of ${GROUP}.target.bed and ${GROUP}.gene.bed. Please read the Quick...
1554 days ago
CrossMap: program for genome coordinates conversion between different assemblies
... <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF...840 days ago
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