Results for "benchmarking and designing tools"
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...based differential expression tools:* CuffDiff* EdgeR* DESeq2 Advanced Command Line Tutorial Graphical O...cally-based variant detection tools:* S...In this protocol we discuss and outline the process of de novo...ts about using Galaxy and the tools, and developing new tools.3645 days ago
Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investi...t necessary to respond quickly and efficiently to the informatic...llenge need to anticipate time and desig...ucture upgrades, staffing, and tools for data analyses and managem...3631 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing...acterial RNA-Seq, gene annotation and metagenomics. However, the co...nteroperability, reproducibility, and trans...conduct their own custom analysis and data manipulation without softw...3566 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experienc...I present ten recommendations for command line software author’s tools to...ieve would greatly improve the uptake and usability of their products, wa...3611 days ago
Swabs to Genomes: A Comprehensive Workflow
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has be...esearch labs with access to standard molecular biology and computational tools. However, there are a wide...ssroom with limited resources and bioinformatics experience to pe...3549 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
In recent years, computational biology and medical informatics have seen...CoB conference seeks original and high quality papers in the fi...g, machine learning, modeling and simulation, pattern recogniti...al Proteomics: Filtering and indexing sequence databases, Pe...3491 days ago
- You are requested to please bookmark collection of bioinformatics tools, scripts, codes that can be...ieced together in a very easy and flexible manner to perform both simple and complex bioinformatics tasks....raw sequence quality analysis and control with few of process for...
3226 days ago
Bioinformatics Made Easy Search: Bioinformatics tools and run genomic analysis in the cloud
InsideDNA makes hundreds of bioinformatics tools immediately available to run via an easy-to-use web interface and allows an accurate search across all functions, tools and pipelines. With InsideDNA, you...atasets in a limitless cloud space, and instantly analyze it with a pow...3174 days ago
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing te...is increasing volume of data requires tools tha...he study of populations, pan-genomes, and genome evolution.This bookmaks have been created to report new tools for whole genome alignments....3011 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3002 days ago
