Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single re...ferences to more accurately order and orient the contigs of a draft...tic relationships among the draft and reference genomes and librari...tiple reference-based scaffolding tools Ragout and MeDuSa.2267 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs...ion about the relationships between members of a network and create full network graphs with one command.2236 days ago
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2208 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located on t...enome: the same sequencing data can be used for the assembly and f...2182 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a sho...eighboring regions of the segment for SNP discovery and linka...e, as a reference. https://www.animalgenome.org/tools/beap/2170 days ago
2170 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequenc...the state of art of aligners and error correction tools. MECAT can be used for effect...ap pipeline, FALCON and Canu(v1.3) in five re...2201 days ago
2189 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headlin...large installations with thousands of tracks. Very light server...no back-end server code, just tools for formatting data files to...2152 days ago