Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is co...) Download the tutorial for CDS and GFF annotation files mkdir -p wgd_tutorial &...ess the CDS file syn: Call I-ADHoRe 3.0 to use GFF files for collinearity analysis vi...1169 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) Sort...891 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from m...n multiple sequence alignment files, Bioinformatics, 20...oriented compression of FASTQ files, Bioinformatics, 20...FaStore Compressor of FASTQ files. • Roguski,...in Variant Call Format (VCF) files. • Deorowicz...877 days ago
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Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field terminator is "\t|\t" Row terminator is "\t|\n" nodes.dmp file consist...674 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many...a format that is compatible with the mapper. Most mappers accept FASTQ or BAM files. Depending on the quality of...437 days ago