Results for "binary files"
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CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes wi...red scaffolds. Script https://sourceforge.net/projects/c-l-authenticator/files/2571 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguat...2564 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capab...lem is solved using an expectation-maximization procedure and an unconstrained binar...2553 days ago
- Tbl2asn is a command-line program that automates the creation of sequence reco...es many of the same functions as Sequin but is driven generally by data files. Tbl2asn generates .sqn files for submission to GenBank. Ad...
2547 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled st...d as well as the reliability of individual residues. You can submit single PDB files or archives containing a set...2521 days ago
- The Charm City Circleator--or Circleator for short--is a P...s that it supports, including: GenBank flat files, GFF, FASTA Accepts a nu...SR and TRF output, SAM/BAM files, VCF-encoded SNPs, tab-d...
2520 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output t...2379 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016...implementations are likely to follow. Tulipseed takes as input alignments files of long reads to sparse short...2369 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data prod...or event level data, and want to jump straight to the getting FASTQ format files from fast5 files you can go straight to the fi...2369 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...s is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The latter were tested under...2369 days ago
