2319 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\...atch "baz"perl -pe '/baz/ && s/foo/bar/' # Binary patch a file (find and replac...n octal number/^0[0-7]+$/ # Check if the string is binar...2316 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a ci...Arcadia Translates text-based descriptions of biological networks (SBML files) into standardized diagrams (...2302 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for impro...p://pipmaker.bx.psu.edu/pipmaker/ PileLineGUI Handling genome position files in NGS studies http://sing.e...2298 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introd...n current directory, including hidden files ls -F — list all i...sh; you can read and write - good for files chmod 700 file — y...on port 1337 Searching grep pattern files — search for patte...2295 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulati...rn scanning and processing. It searches one or more files to see if they contain lines...The working of Awk is as followsAwk reads the input files one line at a time.For each l...2294 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact...f/trf.html Transposon Cluster Finder http://www.mssm.edu/labs/warbup01/paper/files.html TE nest http://www.pla...2288 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betwe...-DTL / 2.0 HGT detection / download binary 22689773 PhyloNet / 3.6.1 HGT detection / download binar...864 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally,...2269 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxfor...es/nmeth.3444 vezzi/FRC_align: Computes FRC from SAM/BAM file and not from afg files https://mail.google.com/mail...2256 days ago