Results for "binary files"
Bio-Scripts
Mapping with BWA-mem or BWA-sampe in one go with python script !
BAM files and mapping BESST requires sorted and indexed BAM files as input. Any read aligner + samtools can be used to obtain such files. Read pairs needs to be align....py) for obtaining sorted and indexed BAM files with BWA-mem or BWA-sampe in...2138 days ago
- ➜ Tools git:(master) ✗ git clone gi...checking for suffix of object files... o checking whether we are...E checking for ANSI C header files... yes checking for sys/type...checking for suffix of object files... o checking whether we are...config.status: executing depfiles commands configure: WARNING:...
2165 days ago
Perl subroutine for reading multifasta file !
sub readfasta { (my $file)=@_; my %sequence; my $header; my $temp_seq; #suppose fasta files contains multiple sequences; open (IN, "2158 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 git:...astq' ]; Right read files: $VAR1 = [ '/media...LEL_STATS Converting input files. (both directions in parallel...K25.stats.sort -done opening files. CMD finished (85 seconds)...ity_out_dir/partitioned_reads.files.list.ok Monday, July 9, 2018...
2141 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./f...ce length >= -R|--read-filter Split into files by READ_FILTER value...according to splitting criteria. --split-files Dump each...
2140 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to...line 84. Deleting gcov-generated files Deleting cover-generated html files init::manifest - Chec...uto::ops - Which opcode files should be compiled in...........enerate a list of platform object files...........done. auto::aligno...1551 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa re...am else echo "Unknown mapper name and parameter !" fi echo "Getting files ready for visualization !" $...2137 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwic...be recursively searched for FASTQ files (required) -o OUTPUT, --ou...de and saved to separate files in this directory...2120 days ago
- set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home/urbe/Tools/Reapr_1..._________________________________________________ All looked OK so cleaning files... " #rm -fr out.* ech...
2113 days ago
- ➜ Tools git:(master) ✗ git clone ht...alTree Downloading https://files.pythonhosted.org/packages/aa/...-- Generating done -- Build files have been written to: /home/u...b/bamtools-2.3.0/src/api/CMakeFiles/BamTools-static.dir/SamProgra...Building CXX object src/CMakeFiles/sniffles.dir/Alignment.cpp.o...
2113 days ago
