Results for "binary files"
Blogs
In comparative genome analysis work, we us...Mac OS1. SetupCreate a folder for the files:$ mkdir -p /SourceCache$ cd /....org/~lds/GD-2.46/)Place the "tar.gz" files in "/SourceCache" and double...ed this was because of some left over files from the failed build. I don&...3942 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on th....php) Genome Synteny Viewer allows users to upload files which contain synteny regions...en them. GSV also allows users to upload annotation files to visualize annotated region...2613 days ago
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Bookmarks
- Citrus Perl is a binary distribution of Perl created for GUI application developers. The distribution includes wxPerl, the Perl wrapper for wxWidgets. Where supported by the operating system wxWidgets is available as a package for the 2.8.x stable branch and the 2.9.x development branch.
3919 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapp...http://mrsfast.sourceforge.net/Home http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/ BFAST...3899 days ago
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Files
Prepare for Coding Interview !
This is a comprehensive guide to prepare for your next coding interview. It's great f...ve algorithms 5. Scheduling algorithms (Greedy) 6. Caching 1 7. Sorting 8. Files 9. Computability 10. Bitwis...847 days ago
Discussion topics
- I'm new to bioinformatics and recently started learning Perl. I found several rival distributions available for Win...IM Perl contains the standard Perl and a lot of extension and Citrus Perl is a binar...
3918 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a...structure and IO Phylogenetic trees.IO from newick files, with support for multiple en...simony (NNI)Distance matrices estimation and I/O to files in Phylip format.Distance met...3950 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein seque...s started in late 2000, and is still in progress. Currently, there are over 80 files and 15,000 lines (except comm...3950 days ago
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Top-level pages
- An algorithm is a computable set of steps to achieve a desired result. We use algorithm...e mid-1900's:- George Boole (1847) has invented the binary algebra, the basis of compute...an be obtained in conquer phase by merging them.The binar...
3949 days ago
- Genomics is the study of the genomes of organisms. The field includes i...anslation. Chromas It will display and prints chromatogram files from ABI automated DNA sequencers, and Staden SCF files which the analysis programs f...
3945 days ago
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Wire posts
News
Programming language to build synthetic DNA
A team led by Georg Seelig (http://homes.cs.washington.edu/~seelig/index.html) at University of Washington has developed a programming language for chemistry...3872 days ago
Biggest Human Brain Project (HBP) launched!!!
"In neuroscience, the project will use neuroinformatics and brain simulation to collect and integrate experimental data, identifying and filling gaps in our knowledg...3864 days ago
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Opportunity posts
Postdoctoral Associate - Bioinformatics at Duke University Medical Center
The Department of Biostatistics and Bioinformatics at Duke University Medical Center...tat.duke.edu. For more info: http://biostat.duke.edu/sites/biostat.duke.edu/files/Halabi%20-%20Postdoc%20Job%20...3923 days ago
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY, Mall Road, Delhi 110007 POSI...try will be closed by 10:00 AM. More @ http://www.igib.res.in/sites/default/files/23092013.htm3905 days ago
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Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/...and build, making sure that this non-standard location is baked into the perl binar...
2147 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences #...eqs = yaml.load(requests.get("https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-sequences.yaml").text)...1139 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at th...in the gene, transcript, protein, and metabolite profiles between normal tissue, normal...ays easily control input output directories, modify files or directories, annotate and...2364 days ago
Tags
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from...Tags: bam, sff, sam, iontorrent data, 454 data, pyrosequencing data, hxd, hexadecimal, binary files, sequencing
3922 days ago
Comments
- ...d and requires an even number of FASTQ files represented as pairs, e.g....;options, and list any number of FASTQ files, e.g kallisto quant -i i...t produces three output files by default: abundances.h5 is a HDF5 binary file containing run info, ab...
1363 days ago
