3944 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on th....php) Genome Synteny Viewer allows users to upload files which contain synteny regions...en them. GSV also allows users to upload annotation files to visualize annotated region...2615 days ago
3921 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapp...http://mrsfast.sourceforge.net/Home http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/ BFAST...3901 days ago
Prepare for Coding Interview !
This is a comprehensive guide to prepare for your next coding interview. It's great f...ve algorithms 5. Scheduling algorithms (Greedy) 6. Caching 1 7. Sorting 8. Files 9. Computability 10. Bitwis...850 days ago
3920 days ago
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a...structure and IO Phylogenetic trees.IO from newick files, with support for multiple en...simony (NNI)Distance matrices estimation and I/O to files in Phylip format.Distance met...3952 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein seque...s started in late 2000, and is still in progress. Currently, there are over 80 files and 15,000 lines (except comm...3952 days ago
3951 days ago
3947 days ago
Programming language to build synthetic DNA
A team led by Georg Seelig (http://homes.cs.washington.edu/~seelig/index.html) at University of Washington has developed a programming language for chemistry...3874 days ago
Biggest Human Brain Project (HBP) launched!!!
"In neuroscience, the project will use neuroinformatics and brain simulation to collect and integrate experimental data, identifying and filling gaps in our knowledg...3866 days ago
Postdoctoral Associate - Bioinformatics at Duke University Medical Center
The Department of Biostatistics and Bioinformatics at Duke University Medical Center...tat.duke.edu. For more info: http://biostat.duke.edu/sites/biostat.duke.edu/files/Halabi%20-%20Postdoc%20Job%20...3925 days ago
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY, Mall Road, Delhi 110007 POSI...try will be closed by 10:00 AM. More @ http://www.igib.res.in/sites/default/files/23092013.htm3907 days ago
2149 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences #...eqs = yaml.load(requests.get("https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-sequences.yaml").text)...1141 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at th...in the gene, transcript, protein, and metabolite profiles between normal tissue, normal...ays easily control input output directories, modify files or directories, annotate and...2367 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from...Tags: bam, sff, sam, iontorrent data, 454 data, pyrosequencing data, hxd, hexadecimal, binary files, sequencing
3924 days ago
1366 days ago