Results for "blastp"
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Basic command-line to run BLAST
...called index files, must be in the same directory as the fasta file. blastp [-h] [-help] [-import_search_...] [-use_sw_tback] [-version] Now we can run the blast job. We will use blastp, which is appropriate for pro...2257 days ago
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BLAST options, setting and defaults
...ation can be found in the BLAST 2.0 Release Notes BLASTNBLASTPBLASTXTBLASTNTBLASTXPSIBLAST...Supported and Suggested Values for Gap Open and Extension in BLASTP, BLASTX, TBLASTN, and TBLASTX...1985 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...which are called from the NGS reads, and aligns the assembled contigs to the query reference protein. GRASP achieves much higher sensitivity than BLASTP for gene annotation purpose....2698 days ago
Frequent parameters for bioinformatics tools !
...y, 16S) -evalue 1E-10 blastn (MLST) -ungapped -dust no -evalue 1E-20 -word_size 32 -culling_limit 2 -perc_identity 95 blastp (VF) -culling_limit 2 ...1298 days ago
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Bio-Scripts
Set up WGD environment using conda !
...Show this message and exit. Commands: dmd All-vs.-all diamond blastp + MCL clustering. kde Fit...distribution. ksd Ks distribution construction. mcl All-vs.-all blastp + MCL clustering. mix Mix...1216 days ago
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Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration of the command line, which you may not have seen or used much before. All of the commands below can copy/pasted. Install software Copy and paste the following commands sudo apt-get update && sudo apt-get -y ...Tags: Basic, command-line, run, BLAST, blastn, blastp
2257 days ago
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Comment on "Basic command-line to run BLAST"
...he BLAST program: BLAST has several different programs that are tailored to different types of queries and databases. The most common programs are blastp, blastn, blastx, tblastn, and...436 days ago
Comment on "Basic command-line to run BLAST"
...6216 sequences in 2.87095 seconds.urbe@urbo214b[Human_vs_Avaga_protein] blastp -query Adineta_vaga.v2.pep.fa...in human_protein.fa -dbtype prot urbe@urbo214b[Human_vs_Avaga_protein] blastp -query Adineta_vaga.v2.pep.fa...2257 days ago
