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List of In-silico Binding Site Prediction Tools
...proteins (CASTp) provides an online resource for locating, delineating and mea...s including both holo and apo forms from more than 40,000 struc...olecular Interactions Server. For a given protein sequence or s...ding site residue predictions for expert and non-expert users a...3745 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data...Rsamtools provides functions for parsing and inspecting samtoo...art.org). The package enables online retrieval of large amounts...nges package provides support for importing into R short read a...extension for genomics data (online...3626 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools incl...in FASTA, FASTQ or tag-count format. In a...r, specifically tailored to Oxford Nanopore Reads, written in P...uo;extract causative variants for monogenic and sporadic geneti...al network”; can catch nonlinear relationships; “Th...2910 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...onal Science Foundation: For the love of science! Head here when searching for ways to pay for that gargantu...oviding incentive and support for highly qualified individuals in o...ation offers grants to select doctors and medical scientists for re...2939 days ago
- alignment: the mapping of a raw sequence r...reference genome. Alignment information is stored in the SAM or BAM file formats. bcftools: a set of comp...two ends which are sequenced form a pair, and are frequently r...hether the read aligns to the forward or reverse strand of the genome. A useful online...
2870 days ago
Awesome perl frameworks, libraries and software - PART 1
...tion and make recommendations for increased performance and stability. kraih/moj...言或系统调用 chromatic/modern_perl_book - Modern Perl: the book gugod/App-perlbrew - Mana.../perl-jam - Perl Jam - a book about organising conferences typester/perldojo - online perl testing! tsee/ZeroMQ...2490 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all c...l analysis, gene fusion detection and eQTL mapping. A survey of best practices for RNA...
2352 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload conti...that the quality of functional information is not as good as RAST,...s and is not currently available for download or use outside of th...KEGG's internal annotation tool for K number assignment of KEGG G...e for download and can be tested online...2333 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used...ofessionally, Python is great for backend web development, data...arn how to do those as well. For pros and cons visit http://...and http://bioinformaticsonline.com/d...x) Non-Programmer's Tutorial for Python 3 (3.3) Non-Pr...2256 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academi...embler based on the FMD-index for large genomes https://github...o/Bandage/ Codon Optimization OnLine (COOL): a web-based multi-...R http://zuguang.de/circlize_book/book/introduction.html#a-qiuck-gl...2243 days ago
