Print the screenshot of read coverage remotely !
#Chrom_2:9700000-9760000 ASCIIGenome -ni --fasta A_vaga.NDPD.fasta -r Chrom_2:9700000-9760000 -x "save >> test.pdf" A_vaga.NDPD.fasta.out.sam.bam.sorted.bam1281 days ago
1213 days ago
1213 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd...read.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Fai...ome/urbe/anaconda3/envs/wgd/./testset -- Installing: /home/urbe...ome/urbe/anaconda3/envs/wgd/./testset/datasetII/ptr_lists_030210...1201 days ago
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'689 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh...(bm1) Min ratio of 1st to 2nd-greatest path depth at high depth. br...(bm2) Min ratio of 1st to 2nd-greatest path depth at low depth. bra...via overlap, but do not merge reads. testme...974 days ago
Commands to Remove White Space In Text Or String Using Awk And Sed In Linux
text=" ATGGTV AGTGACCTAGAGTGATGA G GGRTTT" echo "$text" | sed 's/ //g' OR echo...text" | sed 's/ \$//g' #Multiple space cat /tmp/test.txt | sed 's/[ ]\+/ /g' ec...t1" | awk '{ gsub(/[ ]+/," "); print }' cat /tmp/test.t...954 days ago
947 days ago
926 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Droso...r PacBio assembly cd /genetics/elbers/test/fly2 wget https://ftp.ncbi.n...bx.psu.edu/ mkdir -p /genetics/elbers/test/fly2/kmergenie-illumina-raw-r...p maximum 30000bp cd /genetics/elbers/test/f...915 days ago