HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which i...sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome...2945 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing r...reference genome. Uniquely among current mapping tools, MOSAIK can align reads...s the only aligner to provide consistent mappings for all the generated data (...2920 days ago
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BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circul...or even raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomic region...2788 days ago
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Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by SourceForge.net. The project page is available at...2735 days ago
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