modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the explanation of machine learning predictive models. This package gen...odel exploration unite with tools for EDA (Exploratory Data Analysis) to give a broad...1577 days ago
Best Practices for Variant Calling with the GATK
The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broad...1547 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantificatio...ty. Mass spectra are analyzed in the absence of a reference database (ex: using PEAKS, PepNovo). ProteoClade s...1522 days ago
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean...een used to analyze two biological datasets, but it may serve set analysis in a broad...689 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whol...n site (i.e., Ka and Ks) from duplicate pairs, find peaks in Ks distributions with Gaus...and classify gene pairs into age groups based on Ks peaks.74 days ago
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad...3 days ago