BOL: Results for "calculate"

Results for "calculate"

- Jit@jit.aber
List of gene ontology software and tools
...who wish to analyze spectral counting data from shotgun proteomics. http://pcarvalho.com/patternlab GOssTo GOssTo and GOssToWeb are tools to calculate the semantic similarity betwe...
3707 days ago
- Surabhi Chaudhary@surabhi
BBTools for bioinformatician !
...threads, because the insert-size average is calculated on a per-thread basis, which...ach transcript that was covered. To calculate physical coverage stats (regi...----------------------------------------- Calculate heterozygous rate for sequenc...
2268 days ago
+2 more Blogs

- Robert M Willioms@robert
Software developed in pevsner lab
...e Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze SNP Data From a Pedigree of Two Generations kcoeff: Calculate Cotterman Coefficients of SNP...
3496 days ago
- Archana Malhotra@archana
LAST
...eliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance simi...
2976 days ago
+19 more Bookmarks

- Jit@jit.aber
Download blasr 1.3 version
...to open file './temporarySam' [bwa_aln_core] write to the disk... 0.09 sec[bwa_aln_core] 70778880 sequences have been processed.[bwa_aln_core] calculate SA coordinate... 161.35 sec[b...
2149 days ago

- Neelam Jha@neelam
Most Commonly used Awk by Bioinformatician
...80th: awk 'NR>=20&&NR<=80' input.txt > output.txt calculate the average of column 2: awk...rint x/NR}' input.txt regex (egrep): awk '/^test[0-9]+/' input.txt calculate the sum of column 2 and 3 and...
3910 days ago
- Shikha Logwani@shikha
List of In-silico Binding Site Prediction Tools
...ular surface model (Connolly's surface), all calculated analytically. CASTp can be u...the query. Structural similarity scores are calculated for the query protein's surf...It is designed to analyze proteins channels, calculate pore dimensions and analyze a...
3741 days ago
+4 more Top-level pages

- Jit@jit.aber
Scripts required to calculate tetramer frequencies and create input files for ESOM https://github.com/tetramerFreqs/Binning #Bin #Tetramer
2614 days ago
- Neelam Jha@neelam
How to calculate the #Euclidean and #Manhattan distance? http://math.stackexchange.com/questions/139600/how-to-calculate-the-euclidean-and-manhattan-distance
2578 days ago
+3 more Wire posts

- Nishi Singh@nishi
Concatenate two given sequences, and find the length of the new sequence and also print out the second codon of the sequence
...s; #assign strings to variables my $DNA = "GATTACACAT"; my $polyA = "AAAA"; #concatenate two strings my $modifiedDNA = $DNA.$polyA; #calculate the length of $modifiedDNA an...
2914 days ago
- Nishi Singh@nishi
Count the frequency of base G in a given DNA sequence
...bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the length of $DNA my $DNAle...
2914 days ago
+24 more Bio-Scripts