Results for "calculate"
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Software developed in pevsner lab
...e Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze SNP Data From a Pedigree of Two Generations kcoeff: Calculate Cotterman Coefficients of SNP...3492 days ago
- ...eliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance simi...
2972 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a ta...nd genome size, then select what you want to calculate. Written by Stephen Turner,...lator written by James Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/...2159 days ago
- ...nome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineage probability index (...
2868 days ago
- ...ost-processing scripts, run after the main pipeline, to also extract the intronic regions flanking each exon, investigate putative paralogs, and calculate sequencing depth. For more in...
2733 days ago
- ...o some chance event. We'll also learn the fundamental properties of probability, investigate how probability behaves, and learn how to calculate the probability of a new chan...
2727 days ago
- ... of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance simi...
2687 days ago
- ...the quality score B or # as done by CASAVA and adjust the probabilities in this region.4.Construct an assembled sequence between the primers and calculate the quality.5.Check for vario...
2653 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
...is software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity bet...2162 days ago
Nanopolis: polish a genome assembly
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifica...2104 days ago
