Results for "caller"
Blogs
Software and Tools to detect structure variation with long reads !!
...our goal. Sniffles: Structural variation caller using third generation sequencing Sniffles is a structural variation caller using third generation sequen...-jelly/ SMRT-SV: Structural variant and indel caller for PacBio reads Structural...2619 days ago
BBTools for bioinformatician !
...histogram. For a diploid, the first peak will be the het peak, the second will be the homozygous peak, and the rest will be repeat peaks. The peak caller is not perfect, though, so pa...2282 days ago
Bookmarks
- DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping cost...
2951 days ago
- ...real Pacific Biosciences data, ALE identifies 12 of 12 synthetic errors in a Lambda Phage genome, surpassing even Pacific Biosciences' own variant caller, EviCons. In summary, the ALE...
2943 days ago
- +11 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...ignment file then used for calling SNPs and InDels inside previousy identified QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs wa...3801 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ome Shotgun Assembler and Variant CallerDISCOVAR is a whole genome shotgun assembler and variant caller that can generate high qualit...for correcting sequencing and basecaller errors using sequence assembl...s the overlaps, corrects the base caller errors and performs additiona...2697 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...n College. Linux-64 and Linux-32. PyroBayes - PyroBayes is a novel base caller for pyrosequences from the 45...blication Alta-cyclic - "a novel Illumina Genome-Analyzer (Solexa) base caller" Transcriptomics ERANGE - Ma...3531 days ago
Software packages for next gen sequence analysis
...College. Linux-64 and Linux-32. * PyroBayes - PyroBayes is a novel base caller for pyrosequences from the 45...ication * Alta-cyclic - "a novel Illumina Genome-Analyzer (Solexa) base caller" Transcriptomics * ERANGE -...3254 days ago
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Wire posts
Bio-Scripts
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---...
1454 days ago
Tags
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using th...Tags: Platypus, Haplotype-Based, Variant, Caller, Next, Generation, Sequence, Data, NGS, SNP
2031 days ago
- cisMuton is a caller that detects SNVs/indels by comparing target (foreground) and control (background) samples. cisMuton calls mutations from target capture regions, which are defined by the overlapping regions of ${GROUP}.target.bed and ${GROUP}.gene.bed. Please read the Q...
Tags: caller, detects, SNVs, indels, comparing, target, foreground, control, background, samples
1557 days ago
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Comments
Comment on "List of non-commercial NGS genotype-calling software"
...mpy: a general probabilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural variant and indel caller for mapped sequencing data. [...1154 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based o...2714 days ago
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