List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biologic...2925 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassocia...2227 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput sho...2702 days ago
Awesome perl frameworks, libraries and software - PART 1
...ule to configure and build modules (what backs most Build.PLs) markstos/CGI--Application - A Perl fr...pp-builder - Turns your perl script into .app using Platypus leejo/CGI.pm - The CGI.pm perl mod...2505 days ago
Bioinformatics Web Application Development with Perl
...h;were easy to create with Perl and CGI. Thanks to Perl's ubiquity as...cation Development The old days of CGI programs and the simple devel...k of Perl web development as a cgi-bin directory full of me...ion meant putting one or more .cgi or .pl files i...2338 days ago
Computational resources for TE discovery and TE detection
.../download.php find_ltr http://darwin.informatics.indiana.edu/cgi-bin/evolution/ltr.pl F...ps/ PILER http://www.drive5.com/piler/ PLOTREP http://repeats.abc.hu/cgi-bin/plotrep.pl RepBase http...2290 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-...866 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspe...2218 days ago