Results for "chromosome"
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LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
...ethod that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genom...rton JN#, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J#. Chromosome-scale scaffolding of de novo...2175 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...ion for scaffolding de novo genome assemblies. FragScaff is complementary to Lachesis, providing midrange contiguity to support robust, accurate chromosome-scale de novo genome assembli...2175 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...and elegant graphics visualization of the chromosomes or chromosome regions of any living organis...e elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special...features like visualizing multiple sets, chromosome heat-maps, group annotations,...1842 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
...based on predicted adjacencies. Computer simulation was used to validate the algorithm. We also applied the method to reconstruct the ancestral chromosome X of placental mammals and th...2168 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...Rhie, A., Walenz, B.P., Schmitt, A., Selvaraj, S., Pop, M., Phillippy, A.M. and Koren, S., 2018. Integrating Hi-C links with assembly graphs for chromosome-scale assembly. bioRxiv, p.26...2143 days ago
- CViT - Chromosome Viewing Tool. A collection of Perl scripts that...alizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intende...data but can be used to create images of single chromosomes/linkage groups, contigs, or...
1942 days ago
EyeChrom: Visualizing Chromosome Count Data From Plants
It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database. note: Report an issue via Gihub: git...1936 days ago
- ...d as database='HGNC', value='HGNC:1100' Example for MGI: MGI:MGI:104537 This would be interpreted as database='MGI', value='MGI:104537' chromosome: the chromosome on which this gene is placed....
1933 days ago
- ...epth of coverage of short reads – with insertions, deletions, tandem duplications, inversions and single nucleotide alterations in a human chromosome.
1924 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...C-by-BAC assembly. It has never been tested and is not expected to work on heterozygous or autopolyploid genomes. A protocol for generating chromosome-conformation capture sequenci...1712 days ago
