CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers...1283 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fundamental concepts and exp...esearch. The primary goal of the course is for students to be grounded in theory and leave the course empowere...1242 days ago
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ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulator...tworks of lncRNAs, miRNAs, other ncRNAs and protein-coding...871 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics bas...ation between predictions and B-factors). The environment consideration in ANM theory was published (1) and reviewe...852 days ago
R Shiny in Life Sciences – Top 7 Dashboard Examples
R Shiny is one of the easiest ways for developers to make production-ready dashboards when speed and function...ation available, and because of this, a lot of developers/researchers with non-coding...777 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including a...87 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
OMArk is a software for proteome (protein-coding gene repertoire) quality assessment. It provides measures of proteome completeness, characterizes the consistency of all protein coding...86 days ago