3956 days ago
Next generation sequencing in R or bioconductor environment
...an example of using rtracklayer to visualize alignment coverage. Documentation biomaRt The biomaRt package, provides an interface to a growing collection of databases implementing the...3633 days ago
Commercial and public next-gen-seq (NGS) software
...te.mgrc.com.my:8080/sxo...ligoSearch.php)The SWIFT suit is a software collection for fast index-based sequence..., Passalacqua KD and Bergman NH. SWIFT - The SWIFT suit is a software collection for fast index-based sequence...3527 days ago
Apps for Busy Bioinformatics Researchers !!!
...f effects, with predictions of computationally annotated functional impacts of SNPs. Database entries represent nsSNPs in dbSNP and 1000 Genomes collection, as well as variants from Uni...3550 days ago
Software packages for next gen sequence analysis
..., drastically increasing search speed. Authors are Ondov B, Varadarajan A, Passalacqua KD and Bergman NH. * SWIFT - The SWIFT suit is a software collection for fast index-based sequence...3251 days ago
Comprehensive list of visualization tools for biological pathways
...mic data within the biological context of metabolic pathways http://metpa.metabolomics.ca Omics Viewer Data mapping on BioCyc pathways (collection of 5500 pathway/genome databa...2295 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...that were mutated more often than expected Input: mutations.maf, coverage.txt, covariates.txt Output: output.txt NGS-SNP Description: Collection of command-line scripts for p...2917 days ago
2877 days ago
Genome Assembly Tools and Software - PART1 !!
...ly pipeline VirAmp is a web-based semi-de novo fast virus genome assembly pipeline designed for extremely high coverage NGS data. VirAmp is a collection of existing tools, combined i...2694 days ago
Awesome perl frameworks, libraries and software - PART 1
...www-perl - The libwww-perl collection is a set of Perl modules whic...entreon/centreon-plugins - Collection of plugins for softwares comp...erx/perl-android-scripts - Collection of Perl scripts (examples, pr...NGS - A Perl extension and collection of utilities for Next-Generat...2498 days ago