2228 days ago
2221 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
...ngle-enzyme digestion, double-enzyme digestion and size selection process. It can also analyze multiple genomes at one run and generates concise comparison of enzyme(s) performance acro...2167 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...or easy plotting. gcp: K-mer GC Processor. Creates a matrix of the number of K-mers found given a GC count and a K-mer count. comp: K-mer comparison tool. Creates a matrix of sha...1994 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...tity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft ge...2135 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making conse...2069 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved...2068 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produc...2012 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleo...2012 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRa...1985 days ago