Results for "comparison"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ner is being developed as an application to visualize and interrogate comparisons among multiple complete geno...erved synteny blocks. It reconstructs synteny blocks between pairwise comparison of multiple genomes. The reco...2610 days ago
List of universities offering Bachelor, Master or PhD bioinformatics degree in Malaysia
...countries, particularly India and China, are witnessing the fastest growth and are anticipated to emerge as the dominating forces in future. The Comparison of Bioinformatics Industry be...2509 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3910 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benc...3896 days ago
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Pages
- ...lysis Keith Robison's guide to the exciting world of biosequence comparison! Useful background informatio...ently Glycoscience, Protein Structure. LASSAP a LArge Scale Sequence compArison Package Bioinformatics in pr...
3921 days ago
Virtual Bioinformatics Online Tutorial
...he Gene and Bioinformatics biocomputing, on internet (Univ of) Bielefeld , Germany Virtual School of Natural Sciences Sequence comparisonUniversite de) Rouen , France...3921 days ago
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Top-level pages
- ...and paralogous sequences facilitates the functional annotation in the comparison of whole genomes. Several met...ll protein sequences but also sequences regulating gene expression. A comparison of the genomes of genetically...
3947 days ago
Useful Links for Bioinformaticians
...Terms Similarity Search Tutorials An Overview of Sequence Comparison Algorithms in Molecular Bill...tutorial Pedestrian guide to analysing sequence databases Sequence Comparison (Keith Robison) Database Res...3130 days ago
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Wire posts
News
- ...eate coverage files in standard bedGraph and bigWig file formats. By doing so, deepTools allows the creation of normalized coverage files or the comparison between two files (for exampl...
3465 days ago
Opportunity posts
Structural polymorphism analysis from NGS data
...and phenotypic adaptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genom...3948 days ago
ResearchLabs posts
- ...ology Present Status:: Developing prediction methods for gene, beta-turn, secondary structure and MHC-binding sites. Area of Interest :: Comparison of force field simulations. A...
3885 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...s. Additionally, at the genome level, mutations called rearrangements, such as inversions, transpositions, and duplications, occur. The genome comparison system developed by the Sakak...3917 days ago
- ...ghly conserved, not only at the level of individual protein functions, but also complex biological pathways and systems. These ideas motivated a comparison between results of molecular...
3873 days ago
Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses ge...e=commandArgs(TRUE)[3] library(genoPlotR) #Read fastANI output comparison...1101 days ago
- ...-2.3.0/src/api/internal/index/BamStandardIndex_p.cpp:958:26: warning: comparison between signed and unsigned i...lib/bamtools-2.3.0/src/api/internal/io/BamHttp_p.cpp:409:59: warning: comparison between signed and unsigned i...
2098 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...bioinformatics package is R/Bioconductor. The reason why I like this package is, it provides lots of useful tools for comprehensive analysis and comparison of high-throughput experiment...2362 days ago
Tags
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use PhyloGrapher&nb...Tags: Bioinformatics, Computational Biology, Visualization, Ghraph, Comparison, Accuracy
2950 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjou...Tags: Bioinformatics, Computational Biology, Assembly, Comparison, Accuracy
2950 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny...423 days ago
Comment on "Sibelia: A comparative genomics tool"
...improve coverage. References ========== 1. Ilya Minkin, Nikolay Vyahhi, Son Pham. "SyntenyFinder: A Synteny Blocks Generation and Genome Comparison Tool" (poster), WABI 2012 ht...1285 days ago
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