npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time...tection of genes from mobile elements (plasmids and genomic islands). Complete paper at https://www.ncb...2544 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...ery CAZyme family along with its location in all the relevant full-length CAZyme proteins in all sequenced genomes; dbCAN provides the most complete set of metagenomic CAZym...2538 days ago
2487 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...reater than 99.88% consensus identity when compared to the reference. Furthermore, the assembly with the long nanopore reads presents a much more complete representation of the feature...2354 days ago
Computational Genomics: Applied Comparative Genomics
...t class project. There are no formal course prerequisites, although the course will require familiarity with UNIX scripting and/or programming to complete the assignments and course pr...2354 days ago
2342 days ago
Building Web UIs With Mojolicious Perl
...3 leading web frameworks available in the perl ecosystem (along with Dancer and Catalyst) and by far my favorite. Mojolicious aims to provide a complete web development experience. I...2326 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bact...2326 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...14 in the form of several separate components that used to be run individually.This project aims to ease the usage of Ra by integrating it into a complete de novo assembly tool. Unlik...2325 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...ristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of related organisms...2257 days ago