2647 days ago
2504 days ago
Opera: An optimal genome scaffolding program
...igs assembled from shotgun-sequencing reads.An updated version called OPERA-LG has been re-engineered with features for the assembly of large and complex genomes.Song Gao, Denis Bertr...2364 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instru...2362 days ago
Mobyle: a new full web bioinformatics framework
...ices distributed over remote Mobyle servers, thus enabling a federated network of curated bioinformatics portals without the user having to learn complex concepts or to install sophis...2322 days ago
RGFA: powerful and convenient handling of assembly graphs
RGFA, an implementation of the proposed GFA specification in Ruby. It allows the user to conveniently parse, edit and write GFA files. Complex operations such as the separation of the...1580 days ago
DendroPy: a Python library for phylogenetic computing
...also distributed and installed as part of the libary. DendroPy can thus function as a stand-alone library for phylogenetics, a component of more complex multi-library phyloinformatic...2217 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...lign PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr...2215 days ago
2167 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, precise, compact, unambiguous, easily-interpreta...2187 days ago