List of Bioinformatics Software Tools for Next Generation Sequencing
...r large-scale analysis of rare variants Input: PED file and MAP file Output: Five tab-delimited txt files GCTA Description: Genome Wide Complex Trait Analysis; package progr...2927 days ago
Tools for Searching Repeats And Palindromic Sequences
...lly 1-5bp) such as A, CA, CGG etc.Tandem Repeats - Typically found at the centromeres and telomeres of chromosomes these are duplications of more complex 100-200 base sequences.Segmen...2229 days ago
Genome Assembly Tools and Software - PART1 !!
...s are designed aiming at handling complex genomes. TriMetAss 1.2 &nd...-beta – Assembly by Reduced Complexity ARC is a pipeline whi...representing the transcriptional complexity at at a given gene or locu...sembled metagenome data and their complex metadata. SSP – de...2704 days ago
Single Cell RNAseq data analysis tutorial !!
...gnatures from ensembles, e.g. in disease studies Insufficient for studying heterogeneous systems, e.g. early development studies, complex tissues (brain) Does no...2369 days ago
List of visualization tools for network biology
...alization and exploration for any network and complex system, dynamic and hierarchi...e Prediction and evaluation of protein complexes from purification data expe...tion networks across species to infer protein complexes that are conserved in evolu...2306 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...aryotes. In order for a eukaryotic species to gain a gene by HGT, foreign DNA must enter the host nucleus, integrate into the genome, and in more complex organisms it must enter the s...868 days ago
Some useful Bioinformatics links
...hub.com/GATB/DiscoSnp De novo assembly | Oxford Nanopore Technologies https://nanoporetech.com/taxonomy/term/131 De novo long-read assembly of a complex animal genome | bioRxiv http...2260 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A large number of&...2221 days ago
Protein-Protein Interaction Sites Predictions !
...predicting protein-protein interaction sites HOMCOS A server to predict interacting protein pairs and interacting sites by homology modeling of complex structures HotPOINT Predict...2220 days ago
Learning Python Programming - a bioinformatician perspective !
...iologists and scientists specifically: It's widely used in the scientific community It has a couple of very well designed libraries for doing complex scientific computing (althoug...2201 days ago