Results for "contigs"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...dentifying and displaying genome synteny alignments. The genomes may be represented by sequenced chromosomes (pseudomolecules), by draft sequence contigs, or by FPC physical maps (wit...2615 days ago
String graph based genome assembly software and tools !
...rors in the reads. The second phase assembles contigs from the corrected reads. The...or mate pair data to build scaffolds from the contigs. The output of this software...Such consensus sequences are then extended to contigs. BASE is a practically e...2334 days ago
BBTools for bioinformatician !
...whatever length you want (maximum of input read length). We use it in some cases for generating a fake LMP library for scaffolding from a set of contigs. Read 1 will be from the left...2276 days ago
CANU genome assembly parameters !
...layout : file containing informations about read inclusion in the final assembly *.gfa : file containing the assembly graph by Canu *.contigs.fasta : file containing...1950 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...adequate parameter set for assembly. Assemble the data into scaffolds/contigs. Examine the assembly perform...plain the method of assembling the reads trimmed by quality into draft contigs. spades.py -1 illumina_R1....1209 days ago
