BBTools for bioinformatician !
...e are removed for each duplicate. dedupe=f optical=t Nothing happens. dedupe=t optical=t Only optical duplicates (those with an X or Y coordinate within dist) are detected. A...2270 days ago
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List of In-silico Binding Site Prediction Tools
...SURFNET: http://www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html The SURFNET program generates surfaces and void regions between surfaces from coordinate data supplied in a PDB file....3743 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...es, transcripts, and protein sequence; uses SIFT and PolyPhen Input: Coordinates of variants and nucleotide c...gical Reference Repository; “data integration tool that enables coordinate based searches and joins base...2908 days ago
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RA / Research Associate Bioinformatics/Computational Biologist
...ormatics, metabolomics data, managing the project portal, preparing and filing reports etc. Will be expected to communicate with user groups and coordinate with LIMS group in Hyderabad...3355 days ago
Senior Statistician - Manchester or Belfast UK
...p analytical experimental designs for multiplex clinical diagnostic assays in accordance with regulatory requirements (e.g. CLIA, FDA) Lead and coordinate the evaluation of analytical...3228 days ago
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Insert the sequence at desire location in multi-fasta file with Perl
...se File::Copy; #ARGV[0] should be in following format --- Keep the coordinate sorted by name+location #GenomechrName locationStart AlienGene AlienLength # The coordinate should not overlaps --- next...2313 days ago
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO; use Bio::DB::Fasta; $| = 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -format...2138 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomicsTags: kraken, universal, genomic, coordinate, translator, comparative, genomics
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