Results for "coordinate"
Blogs
BBTools for bioinformatician !
...e are removed for each duplicate. dedupe=f optical=t Nothing happens. dedupe=t optical=t Only optical duplicates (those with an X or Y coordinate within dist) are detected. A...2264 days ago
- ...rimental parameter **, this functionality continues to be under development) # # --genome_guided_bam :genome guided mode, provide path to coordinate-sorted bam file. #...
2126 days ago
Bookmarks
- ...old assembly. The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the old assembly sho...
3000 days ago
- ...one-dimensional views of most genome browsers showing only reference coordinates. Instead, structural variati...BAM files with long, short, or paired-end reads, Ribbon can also load coordinate files from whole genome align...
2746 days ago
- +5 more Bookmarks
Files
- ...e] 70778880 sequences have been processed.[bwa_aln_core] calculate SA coordinate... 161.35 sec[bwa_aln_core] w...rarySam": No such file or directory[bwa_aln_core] convert to sequence coordinate... 1.00 sec[bwa_aln_core] ref...
2145 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...SURFNET: http://www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html The SURFNET program generates surfaces and void regions between surfaces from coordinate data supplied in a PDB file....3737 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...es, transcripts, and protein sequence; uses SIFT and PolyPhen Input: Coordinates of variants and nucleotide c...gical Reference Repository; “data integration tool that enables coordinate based searches and joins base...2902 days ago
Wire posts
News
- ...5 will open soon. Pondicherry University Puducherry has been identified as a nodal agency by the Department of Biotechnology, Govt. of India to coordinate this examination along with n...
3408 days ago
- ...to April 30,2015. Pondicherry University, Puducherry has been identified as a nodal agency by the Department of Biotechnology, Govt. of India to coordinate this examination along with n...
3305 days ago
- +2 more News
Opportunity posts
RA / Research Associate Bioinformatics/Computational Biologist
...ormatics, metabolomics data, managing the project portal, preparing and filing reports etc. Will be expected to communicate with user groups and coordinate with LIMS group in Hyderabad...3349 days ago
Senior Statistician - Manchester or Belfast UK
...p analytical experimental designs for multiplex clinical diagnostic assays in accordance with regulatory requirements (e.g. CLIA, FDA) Lead and coordinate the evaluation of analytical...3222 days ago
- +2 more Opportunity posts
Video
- ...ate the work of neuroscientists around the world, and to catalyze and coordinate the global development of neu...Coordinating Facility (INCF), together with its 17 member countries, coordinates collaborative informatics in...
3814 days ago
Bio-Scripts
Insert the sequence at desire location in multi-fasta file with Perl
...se File::Copy; #ARGV[0] should be in following format --- Keep the coordinate sorted by name+location #GenomechrName locationStart AlienGene AlienLength # The coordinate should not overlaps --- next...2307 days ago
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO; use Bio::DB::Fasta; $| = 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -format...2132 days ago
- +1 more Bio-Scripts
