Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-...age libgetopt-argvfile-perl. (Reading database ... 193749 files and dire...esign, analysis, and interpretation of data for studies in public health...ting structural variants in sequencing data u...1520 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$...EMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS IN...tml5lib-1.0.1-py37_0 ... installing: importlib_metadata-0...1520 days ago
1450 days ago
1411 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified ARCHIVE/ 02/01/2020, 05:30:00 ASN_B...:00 737 B 09/06/2011, 05:30:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/g...1411 days ago
1224 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total..._201904_UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/databa...1223 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::S...em and download the mandatory database # BEGIN { my @impo...ile', 'Try::Tiny', 'Data::Dumper', 'File::Basenam...nt "\nDownloading third party database for Alienomics\n"; #In....arb-silva.de/fileadmin/silva_databa...1169 days ago
1167 days ago
Perl script to check modules installed !
#use strict; use warnings; use ExtUtils::Installed; # # First, check if all the required modules have been i...ir', 'File::Copy', 'POSIX', 'Tie::File', 'Try::Tiny', 'Data::...1164 days ago