Results for "data visualization"
Blogs
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adap...imer sequence removal (iVar; amplicon data only) Duplicate read marking...s and consensus; default for amplicon data || BCFTools, BEDTools; defaul...Primer trimming (Cutadapt; amplicon data only) C...877 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments....ce-saving solution for raw sequencing data, Bioinformatics, 20...k-mer-based compression of sequencing data, Scientific Reports,&nbs...i, L., Disk-based compression of data from gen...864 days ago
- Elgg is an open-source and highly customizable framework used for building an online...er, is written in PHP, and uses MySQL/MariaDB as a database backend, so you will need...systemctl restart apache2 Step 3 – Create a Database for...
712 days ago
List of comparative genomics resources !
...arative Genometrics (CG) -- a database dedicated to biometric co...MBGD -- Microbial genome database for comparative analysis...s genomes. TaxonGap -- a visualization tool for intra- and...hensive suite of programs and databases for comparative analysis of genom...677 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Fi...- node id in GenBank taxonomy database parent tax_id --...t node id in GenBank taxonomy database rank -- rank of t...this subtree has no sequence data yet comments -- free-...660 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw Thi...lse 3. Common-sense approaches to sharing tabular data alongside publication ht...e/article/pii/S2666389921002300 4. A Reproducible Data Analysis...541 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential...that is appropriate for your type of data and research question. I...indexing tools. Prepare the read data: The reads should be in a for...pically involves specifying the input data, referen...423 days ago
Calculate the significance of the difference between two trends
To calculate the significance of the difference between two trends, you can use a...e H1 might be that there is a significant difference. Collect data on the two trends. Make sure that the data is indep...418 days ago
Free Books on Machine Learning and Artificial Intelligent !
An Introduction to Statistical LearningThis book provides a broad and...wishes to use contemporary tools for data analysis. https://hastie.su....ains/ISLR2/ISLRv2_website.pdf Python Data Science HandbookYou’ll...aning, manipulating, and transforming data —...417 days ago
