Results for "data visualization"
Bio-Scripts
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get the...| grep SRR | head -$N > selected.txt # Store the data in the r...1540 days ago
- $MT:~/Downloads/cgr-perl$ sudo apt-get install gnuplot [sudo] p...led: aglfn gnuplot gnuplot-data gnuplot-qt libdouble-conversi...bionic/universe amd64 gnuplot-data all 5.2.2+dfsg1-2ubuntu1 [56....-conversion1:amd64. (Reading database ... 189871 files and dire...sg-3) ... Setting up gnuplot-data (5.2.2+d...
1539 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
$MT:~/Downloads/chaos$ sudo apt-get install python-numpy python-...ecorator python-matplotlib-data python-olefile python-pil pyt...-matplotlib python-matplotlib-data python-numpy python-olefile p...verse amd64 python-matplotlib-data all 2.1.1-2ubuntu3 [3,774 kB]...ted package python-matplotlib-data. Prepar...1539 days ago
Pack a perl program with their dependencies on Ubuntu !
...alysis, and interpretation of data for studies in public health...- A JavaScript module for the visualization of genomic sequence...y generates a "tube map"-like visualization of sequence graphs which have...ctural variants in sequencing data using genome-wide local assembly. Unde...1509 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$...MENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS IN...ml5lib-1.0.1-py37_0 ... installing: importlib_metadata-0.8-py37...1509 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---> 6...
1440 days ago
- #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological data (FASTA/F...
1400 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified ARCHIVE/ 02/01/2020, 05:30:00 ASN...0 737 B 09/06/2011, 05:30:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2acc...1400 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial froze...with flexible solve. Solving environment: failed with repodata from cur...
1214 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Tota...01904_UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database150me...1213 days ago
