Results for "database"
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DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes
Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a key role in the emerging field, synthetic biolo...Tags: DEG, database, essential, genes, prokaryotes, eukaryotes
1124 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've been enthused about using k-mer based simila...Tags: kmer, k-mer, taxonomy, classification, tree, plot, database, similarity, comparision
975 days ago
ncbi-datasets-cli -- Quickstart: command line tools !
Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat . Use datasets to download biological sequence data across all domains of life from NCBI. Use dataformat to convert metadata fr...Tags: ncbi-datasets-cli, database, download, ncbi, genome, genes, datasets
873 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 curated peak datasets derive...Tags: ChIPBase, open, database, studying, transcription, factor, binding, sites, motifs
851 days ago
- ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.
Tags: ChEMBL, curated, database, bioactive, molecules, drug-like, properties
675 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field terminator is "\t|\t" Row terminator is "\t|\n" nodes.dmp file consists of taxonomy nodes. The description for each node includes the following fields: tax_id -- node id in GenBank taxonomy datab...Tags: taxonomy, database, classification, tree
653 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy Science Center of the DOE. Similar resources on the web include CAZy database and CAT. All data in dbCAN are generated based on the family c...Tags: dbCAN, web, server, DataBase, automated, Carbohydrate, active, enzyme, ANnotation
2526 days ago
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