Results for "dataset"
Blogs
Computer simulation of genetic mechanism !!
...n individual based model intended to simulate datasets under a very broad range of...//www.unil.ch/dee/en/home/menuinst/softwares--dataset/softwares/easypop.html...e replica, differential, non-stranded RNA-Seq datasets. http://useq.sourceforge.net...2991 days ago
BBTools for bioinformatician !
...nome. You can repeat this multiple times; each mutant will be different.------------------------------------Partition.shOne can partition a large dataset with partition.sh into smalle...2286 days ago
Bookmarks
- ...2) Nature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysis using a very small synthetic dataset from a well studied organism....
3669 days ago
Integrative Genomics Viewer (IGV) tutorial
...ad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations,...3601 days ago
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Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...a cross validated test on single sequences, our trans-membrane MM, correctly predicts the entire topology for 77% of the sequences in a standard dataset of 86 proteins with supervise...3961 days ago
Pages
Find certain files/documents in Linux OS
As bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong search com...3697 days ago
Genome Assembly Tools and Software - PART2 !!
...atching algorithm. Given an already-assembled dataset, it is capable of assembling...ssembly of DNA insertion variants in NGS read datasets with respect to a reference...vidual reads from a subset of the paired-read dataset, non-paired reads from sequen...2701 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...it/LigASite/index.php?home is a gold-standard dataset of biologically relevant bind...y PISA (3) are used for all structures in the dataset. PDBeMotif: http://www.ebi.a...rate. All these methods are evaluated on two datasets of 48 unbound/bound structur...3760 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...dules (kissnp2 and kissreads) Input: raw NGS datasets; fasta, fastq, gzipped or no...heterogeneity from high-throughput sequencing datasets; calls variants found in <...elationships; “There are four different datasets: training, validation, testi...2925 days ago
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Wire posts
News
Illumina reveals first dataset of long reads
...releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500 base pairs in release dataset. Best thing about this,...3924 days ago
Published a dataset of 363 genomes from approximately 92 percent of bird families
A research team published a dataset of 363 genomes from approximately 92 percent of bird families and showed the significance of sampling dense organisms for biodiversity research. T...1279 days ago
Opportunity posts
RCB Gurgaon Bioinformatics RA/PA Openings
...s highly desirable. Strong PhD level training with proteins chemistry, protein purification and statistical analysis of proteomics or genomics dataset will be preferred. Either/ bo...3736 days ago
Bio-Scripts
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...bject src/CMakeFiles/i-adhore.dir/DataSet.cpp.o [ 54%] Building CXX ob...ct src/CMakeFiles/i-visualize.dir/DataSet.cpp.o [ 59%] Building CXX ob...urbe/anaconda3/envs/wgd/./testset/datasetII/ptr_lists_030210_201/scaffo...urbe/anaconda3/envs/wgd/./testset/datasetII/ptr_lists_030210_201/scaffo...1219 days ago
Tags
Features to select non-redundant protein-ligand dataset
Hi,I have a huge protein-ligand dataset which is also redundant, I want to remove that redundancy using CD-HIT program, I want to know different features on the base of which I can filter(narrow down) my data (for example just take those ligands which are drug like molecule, neglect all o...Tags: Protein Ligand Interaction, Dataset, Redundant data, CD-HIT
3841 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBank Rel.123. The aim of this data set is to give standardized material to train and to assess the prediction accuracy of computational approaches for gene identification and c...Tags: HS3D, Homo, Sapiens, Splice, Sites, Dataset, Human
1439 days ago
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