Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@j...answer key is released... Evaluation of genome assembly software based on long readsB...BioStar 409 days ago Evaluationgenomeassemblysoftwarelongreads TGS...1511 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PIC...1337 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1216 days ago
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Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1054 days ago
Tadpole is 250x faster than SPADes assembler !
...more information. Usage: Assembly: tadpole.sh in= out= Ext...h. showstats=t Print assembly statistics after writing cont...up kmer extension lookups. Assembly parameters: mincountseed=3...reads that cannot be used for assembly. This me...976 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers/test/fly...918 days ago
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