Results for "denovo sequencing"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...rectly from Raw Reads REPdenovo is designed for constructing repe..., like those produced by SMRT sequencing technologies (PacBio RS II) a...t-read assemblers such as SOAPdenovo and ALLPATHS-LG. The goal of asse...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...2698 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from...2535 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and...n and collection of utilities for Next-Generation Sequencing (NGS) data analysis masukomi...bsp;- A Modern Perl Framework for High Throughput Sequencing analysis gbarr/perl-libnet&n...2502 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (use.../main/qcluster.html Reads error correction Lighter Correction of sequencing errors in raw, whole genome sequencing reads (k-mer based) Software...2384 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been wi...iorxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing analysis http://biorxiv.org/...2363 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data anal...
2363 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only f...sequence features, next-generation sequencing (NGS) data and the results of...of sequences derived from multiple sequencing technologies. Low- or high-de...que sequences in an entire Illumina sequencing run http://www.sourceforge.n...2296 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and ali...2286 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analy...Sciences, has over 11 years experience in molecular biology, next-generation sequencing based testing, clinical genom...2277 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangemen...e European eel genome from nanopore sequencing reads | Scientific Reports h...t and sensitive mapping of nanopore sequencing reads with GraphMap | Nature...sembled de novo using only nanopore sequencing data | Nature Methods https:...2254 days ago
