Installing pb-assembly on Linux !
...libsndfile/1.0.28-GCCcore-6.4.0 Auto...netcdf/intel/64/3.6.0 expat/2.2.0-f...randrproto/1.5.0-foss-2016a HDF5/1.10.1-foss-2017b...libstdcxx-ng: 7.2.0-hdf63c60_3 conda-forge...2055 days ago
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Installing Platypus on Ubuntu !
...---------|----------------- htslib-1.9 | h57f8fdf_0 1.2 MB bioconda...7.61.0-h93b3f91_2 conda-forge htslib: 1.9-h57f8fdf_0 bioconda kr...2040 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
...ctGcBiasMetrics.jar) R=data/Cdiff078.fa I=aln-pe.mapped.sorted.$i.bam O=aln-pe.mapped.sorted.${i}_GCBias.txt CHART=aln-pe.mapped.sorted.${i}_GCBias.pdf ASSUME_SORTED=true; done2025 days ago
Setting up falconUnzip conda environments for genome assembly !
...a-forge cryptography-2.3.1 | py27hdffb7b8_0 964 KB conda-...a-forge cryptography: 2.3.1-py27hdffb7b8_0 conda-forge...numpy-base: 1.15.0-py27h3dfced4_0 o...2011 days ago
Bash commandline to install Anaconda !
...mkl ... installing: ca-certificates-2019.1.23-0 ... installing: intel-openmp-2019.3-199 ... installing: libgcc-ng-8.2.0-hdf63c60_1 ... installing: libgfortran-ng-7.3.0-hdf63c60_0 ... installing: libst...1576 days ago
Bash command to install Miniconda !
...ba5d50_0 - idna==2.8=py37_0 - libedit==3.1.20181209=hc058e9b_0 - libffi==3.2.1=hd88cf55_4 - libgcc-ng==9.1.0=hdf63c60_0 - libstdcxx-ng==9.1.0=hdf63c60_0 - ncurses==6.1=he...1576 days ago
Bash command to install bwa, samtools, picard !
...250 KB libstdcxx-ng-9.1.0 | hdf63c60_0 4.0 MB sa...ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0 ncurses...kgs/main/linux-64::gfortran_impl_linux-64-7.3.0-hdf63c60_1 gfortran_linux-64...1576 days ago
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