3493 days ago
3493 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the d...ceForge/EPE.html GenMAPP Visualization of gene expression and other genomic data on map...h Mapping and visualizing microarray gene-expression data and integrated biologica...2284 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many differe...or microarray and PCR data include: Gene expression including alternative splicing, miRNA expression, Genome Wide Association Stud...ion affects phenotype.”; no actual expression data used, only in silico exp...2906 days ago
Genome Assembly Tools and Software - PART1 !!
...to address variable transcript expression levels. It first filters and me...scripts can also estimate gene expression levels, identify candidate po...iced isoforms and estimates the expression level of them. VirAmp &n...their abundances, and tests for differential expression and regulation i...2682 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- A...population over another feature found in the population. This occurs through differenti...2459 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignme...://www.cs.cmu.edu/~ckingsf/software/sailfish/ Salmon Quantification of the expression of transcripts using RNA-seq...2368 days ago
Single Cell RNAseq data analysis tutorial !!
...ce Measures the average expression level for each gene acro...ecies Useful for quantifying expression signatures from ensembles, e....the stochastic nature of gene expression Following are the useful l...l Resolution of Temporal Gene Expression during Heart Development htt...2347 days ago
2347 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="...t @a }' # Print only lines that match a regular expressionperl -ne '/regex/ && p...# Print only lines that do not match a regular expressionperl -ne '!/regex/ &&...2299 days ago