Mobyle: a new full web bioinformatics framework
...eatures that allow the user to reproduce analyses and to combine tools using a hierarchical typing system. Mobyle offers invocation of services distributed over remote Mobyle servers, t...2318 days ago
DendroPy: a Python library for phylogenetic computing
...ion scripts for performing some useful phylogenetic operations, such as data conversion and tree posterior distribution summarization, are also distributed and installed as part of the...2212 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...le for any damage resulting from the use of this software. The program package, including source codes, executables, and this documentation, is distributed free of charge. If you use th...2191 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
...nge of different adaptive models (selective sweeps, polygenic adaptation, epistasis). MimicrEE2 runs on any computer with Java installed. It is distributed under the GPLv3 license at&nb...2054 days ago
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HumCFS: a database of fragile sites in human chromosomes
...ruses and hotspots for chromosomal re-arrangement. There is large gap in our knowledge of human CFS region as knowledge about CFS are unequally distributed in literature, which impose a...1849 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...ons and Probalign. In addition, MSAProbs is optimized for shared-memory CPUs by employing a multi-threaded design, and further parallelized for distributed-memory systems using MPI to o...1770 days ago
mutatrix: a population genome simulator which generates simulated genomes.
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fasta1567 days ago