NanoPack: visualizing and processing long-read sequencing data
...e GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible w...1951 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...views from the same primary sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text files. Please check our documentation wiki for details on how...1942 days ago
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UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies....1932 days ago
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GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
...ultaneously and extracting homologous regions) of the new program are not matched by other programs. The program is available with explanatory documentation at https://github.com/b-...1919 days ago
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocs1773 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...ub.docker.com/r/biodatageeks/. Supplementary information on benchmarking procedure as well as test data are publicly accessible at the project documentation site http://biodatageeks...1597 days ago
heatmaply: popular graphical method for visualizing high-dimensional data
...lot". This interface can provide smaller objects and faster rendering to disk in many cases and provides otherwise almost identical features. Documentation for this package is also avai...1570 days ago
Juicebox: Visualization and analysis software for Hi-C data
...e source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or use Juicebox on the web. Detailed documentation is available on the wiki...1529 days ago