Tools to detect synteny blocks regions among multiple genomes
...ynteny detections are: SyntenyTracker ( http://www-app.igb.uiuc.edu/labs/lewin/donthu/Synteny_assign/html/), SyntenyTracker was shown to be an efficient and accurate automated tool f...2613 days ago
List of useful machine / ai learning resources !
ML cheatsheet ! https://github.com/remicnrd/ml_cheatsheet Visual AI / ML https://setosa.io/ev/ Simple and efficient tools for predictive data analysis https://scikit-learn.org/stable/1135 days ago
Computer simulation of genetic mechanism !!
...forge.net/ fwdpp A C++ template library for implementing efficient forward simulations. http://m...erating haplotype data with pre-specified allele frequencies and LD coefficients http://cran.r-project.org/we...2978 days ago
String graph based genome assembly software and tools !
...ta structure, the algorithms are very memory efficient. The SGA assembly has three d...n important number of new ideas, such as the efficient computation of the transitive...ended to contigs. BASE is a practically efficient tool for constructing contig,...2332 days ago
List of motif discovery tools !
...owledge-based FADE and Contacts Interactive forecasting of protein interaction hot spots. MAGIIC-PRO -- detecting functional signatures by efficient discovery of long patterns in...1996 days ago