Results for "efficient"
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LIBSVM -- A Library for Support Vector Machines
...imple interface where users can easily link it with their own programs. Main features of LIBSVM include Different SVM formulations Efficient multi-class classification C...2482 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...ting fosmid ends recovers entire chromosomes. Meraculous relies on an efficient and conservative traversal of...orrection step as used in other short-read assemblers. A novel memory-efficient hashing scheme is introduced....2385 days ago
Opera: An optimal genome scaffolding program
...neered with features for the assembly of large and complex genomes.Song Gao, Denis Bertrand, Burton K. H. Chia and Niranjan Nagarajan. OPERA-LG: efficient and exact scaffolding of larg...2365 days ago
- ...sequence alignment (global, local, and glocal alignment &mdash with constant & affine gap penalties Algorithms and data structures for efficient text indexing and exact&...
2363 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× sim...2357 days ago
MeDuSa: a multi-draft based scaffolder
...ation of the contigs. MeDuSa formalises the scaffolding problem by means of a combinatorial optimisation formulation on graphs and implements an efficient constant factor approximation...2286 days ago
- ...en scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, thereby achieving accurate and efficient gap closure. We demonstrate w...
2169 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with...2169 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
...ovo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of alig...2200 days ago
- ...on in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow.
2183 days ago
