BOL

Results for "entrez"

Bio-Scripts

• • Surabhi Chaudhary@surabhi

  

  Python script to download covid genome !

  ...k-sequences'] print("got %d sequences" % len(seqs)) from Bio import Entrez allseq = {} for x in seqs:...ete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm,...

  1136 days ago

• • Neelam Jha@neelam

  

  Install NCBI entrez-direct and esearch using conda !

  $ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solv...be0_2 Proceed ([y]/n)? y Downloading and Extracting Packages entrez-direct-13.9 | 5.2 MB | #...

  1101 days ago

• • Anjana@anjana

  

  Retrieve NCBI GenBank records with a range of accession numbers

  ...returnType => undef, maxRecords => undef, format => undef, verbose => undef, url => 'http://www.ncbi.nlm.nih.gov/entrez/eutils', retries => 0...

  2916 days ago

• • Jit@jit.aber

  

  Install Kraken2 using conda !

  (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve...

  1215 days ago

• • Surabhi Chaudhary@surabhi

  

  Installing Covid19 Environment !

  ...######################################################################################################################################### | 100% entrez-direct-15.6 | 7.6 MB | #...

  923 days ago

• • Rahul Nayak@rahul

  

  Update conda !

  ...-------------------------------- Total: 3.7 MB The following packages will be REMOVED: entrez-direct-15.6-he881be0_1 per...

  785 days ago