Results for "error"
Top-level pages
...defined, so the algorithm will try to group similar items together. Regression - Attempts to find a function which models the data with the least error. Association rule learning -...3949 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...y-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 1...2010. PubMedCentral Correction of sequencing errors in a mixed set of reads. Sal...t evidence of editing or are simply sequencing errors - the authors stand by their...3782 days ago
Commercial and public next-gen-seq (NGS) software
...ael Smith Genome Sciences Centre. Perl/Linux. SOAPdenovo - Part of the SOAP suite. See above. VCAKE - De novo assembly of short reads with robust error correction. An improvement on...3521 days ago
Software packages for next gen sequence analysis
...Smith Genome Sciences Centre. Perl/Linux. * SOAPdenovo - Part of the SOAP suite. See above. * VCAKE - De novo assembly of short reads with robust error correction. An improvement on...3245 days ago
Genome Assembly Tools and Software - PART1 !!
...lihood of the assembly in a model encompaasing error rate, insert length and other...r is a tool that aims to identify the assembly errors with high accuracy in an unb...nd de Bruijn graph by decomposing reads within error-prone regions, while extendin...2688 days ago
Perl Special Vars Quick Reference
...\f"). $^A Format Accumulator Status Reporting $? Child error. Status code of most recent system call or pipe. $! Operating System Error. (What just went 'bang'?)...2647 days ago
Awesome perl frameworks, libraries and software - PART 1
...of very long (and possibly noisy) audio and is robust to transcription errors. It is mainly written as a p...data as JSON from parsed results. Formerly known as bounceHammer 4: an error mail analyzer. shenwei356/bi...2492 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...the Overlap-Layout Consensus (OLC) approach without the necessity of an error correction stage (uses minima...https://github.com/lh3/miniasm LINKS Scaffolding genome assembly with error-containing long sequence (e.g...2374 days ago
- ...file with trusted contigs --untrusted-contigs <filename> file with untrusted contigs Pipeline options: --only-error-correction runs only read error correction (without assemblin...
2354 days ago
Run miniasm assembler on nanopore reads !
...oes not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw in...2333 days ago
