Genome Assembly Tools and Software - PART1 !!
...ental results showed that SWAP-Assembler is the fastest and most efficient assembl...Haplotype Assembly from Long Gapless Reads A fast and memory-efficient method f...a is given by pre-assembled scaffold sequences (FASTA) and NGS paired-read data (F...2686 days ago
Awesome perl frameworks, libraries and software - PART 1
...oMQ-Perl - Perl interface to 0MQ2 trizen/obmenu-generator - A fast menu generator for the Openbo...e to Git repositories tokuhirom/FormValidator-Lite - very lite and fast validation library for perl...2489 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ttps://github.com/ChimeRScope/ChimeRScope/wiki FastGT Genotyping of known SNV/SN...ICADo General mapper Minimap Lightweight and fast read mapper and read overlap...oftware/stringMLST Taxonomer k-mer-based ultrafast metagenomics tool for assigni...2371 days ago
Tools for bacterial whole genome annotation
...not currently available for download or use outside of the NCBI environment. BEACON (automated tool for Bacterial GEnome Annotation ComparisON), a fast tool for an automated and a s...2332 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for...tail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xava-ont ONT_A.fasta ONT_A.fasta -t10 -X > AON...ssemble with miniasm: miniasm -f ONT_A.fasta AONT.paf > AONT.gfa ...2330 days ago
List of visualization tools for genome alignments
...leLineGUI Handling genome position files in NGS studies http://sing.ei.uvigo.es/pileline/pilelinegui.html SAMtools tview Simple and fast text alignment viewer; NGS co...2284 days ago
Some useful Bioinformatics links
...String-overlap Assembly of GEnomes | BMC Bioinformatics | Full Text https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-15-302 Fast and sensitive mapping of nano...2242 days ago
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