RAMICS substantially outperforms other mapping approaches for alignment of coding DNA to reference sequences. http://hiv.sanbi.ac.za/tools#/ramics #Tools #Alignment #NGS #RAMICS
AliView: a fast and lightweight alignment viewer and editor for large data sets. http://bioinformatics.oxfordjournals.org/content/early/2014/08/05/bioinformatics.btu531.short #AliView
#Mapping #sequencing #reads to a #reference #genome with #Bowtie2: a step-by-step guide https://insidedna.me/tutorials/view/how-to-use-bowtie2-read-mapping